Getting Started with OneOmics™ Suite 3.4

For research use only. Not for use in diagnostic procedures.

Answer

The OneOmics™ suite is a unified platform that enables processing and analysis of data files acquired on a SCIEX ZenoTOF 7600 or TripleTOF 5600, 5600+, 6600, or 6600+ system. Visualization of large and complex data sets can be achieved for proteomics, metabolomics, and multi-omics applications. The web-based and cloud-powered suite also enables easy access, fast processing, and collaborative sharing. Here are some things to consider when installing and using the OneOmics suite.

• Google Chrome is recommended for use with the OneOmics app.
• The two supported cloud storage solutions include the Data Store, a SCIEX storage solution, and the Illumina BaseSpace Sequence Hub.
• Each OneOmics license comes with a group account. This group account contains the user accounts of the users who have access to the system.
• User accounts can have the role of either user or administrator.
• PeakView® software version 2.2 and CloudConnect 1.8 companion software must be installed first in order to upload data to the OneOmics suite (to Data Store or the Illumina BaseSpace Sequence Hub). For more information on how to set up the CloudConnect microapp, read the release notes here. 

Uploading data to a user account in the OneOmics suite:
1) Once CloudConnect and PeakView software are installed, users can then log in to their account in the OneOmics suite. Users can access the Login option in the CloudConnect menu in the PeakView software and must provide their OneOmics email account and password. 



2) Data (wiff, fasta, and RNA-Seq files in CuffDiff output) can now be uploaded to the Data Store or the Illumina BaseSpace Sequence Hub. Before uploading files, users should plan how the data will be organized. Files and folders cannot be moved or renamed after they are uploaded.

3) To begin uploading data, users will need to select Upload in the CloudConnect menu.



4)  The data file of interest is located and selected. It is recommended that a new folder be created for each new project and workflow in the OneOmics suite or that a folder with a detailed description of the files be created for each project.

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5) Once the data are uploaded to the Data Store in the cloud, a green check mark will appear next to each successfully uploaded data set.



6) The newly uploaded data files can now be viewed on the OneOmics cloud website (https://oneomics.sciexcloud.com/). 



7) After the data are uploaded, the user can choose the workflows they need for data processing. Going forward, all data processing will be performed in the cloud.