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Calculating the MS2 Score in the BioPharmaView™ Software for Confident Selection of Peptides for Quantification

In BioPharmaView™ software, the MS2 score evaluates the quality of a match between MS/MS peaks and a set of theoretical fragments. The MS2 score is based on the probability of the MS/MS peaks matching the set of theoretical fragments of the molecule by chance. The score is calculated automatically by the software.